Hello again BBellami. The misunderstanding seems to be centered around the size of bars you are using. So I made a new NQ 09-16 chart using 12 tick Diagonastic bars per the Triple Crown Template. . Comparison Jing picture to follow.
When I took the screen shot of the Triple Crown Beta Rules and Market Analyzer I was using what was current today (6/30/16) so the Market Analyzer will not match the jing picture from 6/29/16.
By changing the tick size bars that you use, it completely changes your chart. The indicators works off of tick size so Trend Catcher Arrow, MVP Triangles, expected Volume etc will be different. The larger the tick size, the less chop and smoother the trend. However, if too big you may not have any trades and have to wait thru chop (which you do not know you are going through).
Regarding your last question about the Market Analyzer-Yes, providing that you are using the correct size bar for the Market Analyzer.. Even going from 12 tick to 10 tick Will create wrong information.
I hope this makes more sense to you now.